Genomic Data Transfer Achieved at Nearly 10 Gigabits/Second Between US and China

This data rate is equivalent to moving more than 100 million megabytes (comparable to over 5,400 full Blu-ray discs) in one day.

The data transfer demonstration was part of a June 22, 2012, event in Beijing (China), celebrating the new 10 Gigabit US-China network connection, which was supported by Internet2, the China Education and Research Network (CERNET), the US National Science Foundation (NSF; Arlington, VA, USA), and Indiana University (Bloomington, USA). Three centers and their representatives participated in the demonstration--Beijing Genomics Institute (BGI; Beijing, China), one of the world’s largest genomics organization; Dr. Xing Xu, director of cloud computing product, University of California, Davis (UC Davis; USA); Dr. Dawei Lin, director of UC Davis Bioinformatics Core of Genome Center; and US National Center for Biotechnology Information (NCBI; Bethesda, MD, USA), Dr. Don Preuss, head of systems group, Aspera, Inc. (Emeryville, CA, USA), the developer of the technology that moves the world’s data at maximum speed, provided software to support the data transfers.

BGI performed the live demos of ultra-high-speed data exchanges between the three world-class genomics institutions. For example, BGI transferred 24 Gigabytes of genomic data from Beijing to UC Davis in less than 30 seconds. A file of the same size sent over the public Internet a few days earlier took more than 26 hours.

“The 10 Gigabit network connection is even faster than transferring data to most local hard drives,” said Dr. Lin. “The use of a 10 Gigabit network connection will be groundbreaking, very much like email replacing hand delivered mail for communication. It will enable scientists in the genomics-related fields to communicate and transfer data more rapidly and conveniently, and bring the best minds together to better explore the mysteries of life science.”

Dr. Xu said, “This was the first time that large genomic data were transferred between China and the US over a 10 Gigabit network. BGI is excited to demonstrate this achievement and looks forward to the potential opportunity to incorporate this breakthrough into our service capabilities to facilitate more rapid and efficient exchange of big genomic data globally.”

Genomics has transformed the life science field. Whereas the cost of DNA sequencing is gradually decreasing, the amount of data generated with next-generation sequencing (NGS) technologies is growing at an unprecedented rate. In the age of an enormous amount of genomics data, how to effectively share the very large volume of data has become a significant research bottleneck. The 10 Gigabit Internet connections may provide a significant new tool for handling “Big Data” and increasing scientific collaboration, education, and cultural exchange between the two countries.

Related Links:
China Education and Research Network
US National Science Foundation