Novel X-Ray Imaging Technique Reveals Best SARS-CoV-2 Antibodies for Developing Reliable, Rapid COVID-19 Tests

Such a test would only require a small drop of mucus or saliva, could give results in 15 minutes, and could detect a COVID-19 infection one day before the onset of symptoms.

The current gold standard tests for COVID-19 use a form of polymerase chain reaction (PCR) to identify the presence of SARS-CoV-2 nucleic acid (RNA) rather than a viral protein. They are quite accurate, with false negative rates ranging less than 5% (depending primarily on the sampling site, sample type, and stage of infection). However, PCR tests must be sent away for analysis at an accredited lab.

Rapid antigen tests use antibodies to detect specific parts of the viral particle itself. Current antigen tests have a very low rate of false positives, but are plagued by high false negative rates, and therefore, cannot replace PCR tests for definitive COVID-19 diagnosis. If a more accurate antigen test was brought to market, it could serve as a helpful initial screening tool similar to how home pregnancy tests work. In the case of a positive result, the user would need to begin appropriate precautionary measures (isolation and other transmission-prevention behaviors) and then have the diagnosis confirmed by an official test at a health clinic.

The Berkeley researchers used small angle X-ray scattering (SAXS) performed at Berkeley Lab’s Advanced Light Source (ALS) to examine about 20 antibody-antigen interactions. Their data showed that a particular pair of monoclonal antibodies bound to the nucleocapsid protein very strongly and stably, in part due to the antibodies’ rigidity. All antibodies vary in their degree of rigidity based on the amino acid sequence of their “arms,” which are the part of the Y-shaped molecules that bind to antigens.

Antibody networking and high binding stability are known to improve the sensitivity of lateral flow assays, and researchers have long speculated that antibody flexibility plays a role in both properties. But studying the physical dynamics of antibody-antigen pairs to find the most effective antibodies is very difficult with traditional imaging techniques, which require the molecules to be stabilized or crystallized. The SAXS technique developed by the Berkeley researchers allows scientists to examine antibodies and antigens in their natural state, i.e. when moving freely in a liquid.

“The combination of the two rigid antibodies was also observed to increase networking – a process in which multiple antibodies bound to the same antigen at different sites form larger clumps or ‘networks,’” explained Curtis D. Hodg, a postdoctoral researcher and first author on the study.

“As we move toward gaining normalcy and reopening economies worldwide, there is continued demand for rapid, low-cost tests that can be self-administered without the need for a trained professional,” said Michal Hammel, a biophysicist in Berkeley Lab’s Biosciences Area. “Currently used COVID-19 PCR tests are expensive, at about USD 100 per test, and on average, US labs are performing one million tests per day. An accurate rapid antigen test could cost USD 1 each and eliminate the wait time.”

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